Livestock Research for Rural Development, 2017; 29 (2)Information on the prevalence and potential health consequences associated with the presence of parasites in livestock manures is lacking in many developing countries. In 2015, a cross-sectional study was conducted in 79 pig farms to estimate farm-level prevalence of helminth eggs using McMaster technique and protozoan parasite oocysts using the Modified Ziehl–Neelsen technique in Morogoro municipality, Tanzania. Farm-level representative samples of manure were collected from pig manure disposal sites in each farm. Pig farmers’ knowledge and practices related to pig husbandry and manure handling were assessed using a structured questionnaire. All pigs were reared indoors and their manures were handled in solid form. Farm-level prevalence of strongyle eggs was 7.6% (95% CI: 1.8, 13.4) and that of Ascaris spp. was 6.3% (95% CI: 0.9, 11.7). Prevalence of acid-fast protozoan oocysts was 6.3% (95% CI: 0.9, 11.7), includingIsospora spp., Cryptosporidium spp. and Eimeria spp. Approximately 27.8% (95% CI: 17.9, 37.7) of the samples had acid-fast objects that resembled microsporidia and other fungal spores. About 94.9% (95% CI: 90.0, 99.8) of the farmers reported to have experienced diseases in their pigs, commonly helminthosis. Only about 42.5% (95% CI: 31.3, 53.9) believed that pig manure could cause some human health problems. Approximately, 65.3% (54.3, 76.3) reported to clean their pig pens daily. About 61.1% (95% CI: 49.9, 72.3) reported to wear special clothing when removing pig manure. Handling of pig manure is associated with potential biological hazards with potential for zoonotic transmission in urban/peri-urban areas of Morogoro municipality, Tanzania. Further studies are needed to measure the actual risks associated with livestock manure handling and utilisation including parasite viability and characterization studies to guide implementation of appropriate bio-security and bio-safety measures in urban/peri-urban livestock farms.