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Investing in food safety for developing countries: opportunities and challenges in applying whole-genome sequencing for food safety management

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dc.creator Apruzzese, I.
dc.creator Song, E.
dc.creator Bonah, E.
dc.creator Sanidad, V. S.
dc.creator Leekitcharoenphon, P.
dc.creator Medardus, J. J.
dc.creator Abdalla, N.
dc.creator Hosseini, H.
dc.creator Takeuchi, M.
dc.date 2020-08-25T06:25:45Z
dc.date 2020-08-25T06:25:45Z
dc.date 2019
dc.date.accessioned 2022-10-25T08:53:50Z
dc.date.available 2022-10-25T08:53:50Z
dc.identifier https://www.suaire.sua.ac.tz/handle/123456789/3138
dc.identifier.uri http://hdl.handle.net/123456789/94207
dc.description FOODBORNE PATHOGENS AND DISEASE, Volume 16, Number 7, 2019
dc.description Whole-genome sequencing (WGS) has become a significant tool in investigating foodborne disease outbreaks and some countries have incorporated WGS into national food control systems. However, WGS poses technical chal- lenges that deter developing countries from incorporating it into their food safety management system. A rapid scoping review was conducted, followed by a focus group session, to understand the current situation regarding the use of WGS for foodborne disease surveillance and food monitoring at the global level and identify key limiting factors for developing countries in adopting WGS for their food control systems. The results showed that some developed nations routinely use WGS in their food surveillance systems resulting in more precise understanding of the causes of outbreaks. In developing nations, knowledge of WGS exists in the academic/research sectors; however, there is limited understanding at the government level regarding the usefulness of WGS for food safety regulatory activities. Thus, incorporation of WGS is extremely limited in most developing nations. While some countries lack the capacity to collect and analyze the data generated from WGS, the most significant technical gap in most developing countries is in data interpretation using bioinformatics. The gaps in knowledge and capacities between developed and developing nations regarding use of WGS likely introduce an inequality in international food trade, and thus, relevant international organizations, as well as the countries that are already proficient in the use of WGS, have significant roles in assisting developing nations to be able to fully benefit from the technology and its applications in food safety management.
dc.format application/pdf
dc.language en
dc.publisher Food and Agriculture Organization of the United Nations / Mary Ann Liebert, Inc.
dc.relation FOODBORNE PATHOGENS AND DISEASE;Volume 16, Number 7
dc.subject Whole-genome sequencing
dc.subject Next-generation sequencing
dc.subject Foodborne disease surveillance
dc.subject Food safety
dc.subject Developing countries
dc.subject Food-Agriculture Organization
dc.subject United Nations
dc.title Investing in food safety for developing countries: opportunities and challenges in applying whole-genome sequencing for food safety management
dc.type Article


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