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A Molecular Investigation of the Solvent Influence on Inter- and Intra-Molecular Hydrogen Bond Interaction of Linamarin

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dc.creator Paul, Lucas
dc.creator Deogratias, Geradius
dc.creator Shadrack, Daniel
dc.creator Mudogo, Celestin
dc.creator Mtei, Kelvin
dc.creator Machunda, Revocatus
dc.creator Paluch, Andrew
dc.creator Ntie‐Kang, Fidele
dc.date 2022-03-02T14:16:42Z
dc.date 2022-03-02T14:16:42Z
dc.date 2022-02-11
dc.date.accessioned 2022-10-25T09:24:36Z
dc.date.available 2022-10-25T09:24:36Z
dc.identifier https://doi.org/10.3390/pr10020352
dc.identifier https://dspace.nm-aist.ac.tz/handle/20.500.12479/1424
dc.identifier.uri http://hdl.handle.net/123456789/95606
dc.description This research article published by MDPI, 2022
dc.description Linamarin has been reported to have anticancer activities; however, its extraction and isolation using different solvents yield a low amount. Therefore, understanding the physical prop‐ erties, such as solvents’ solubility, membrane permeability and lipophilicity and how they are asso‐ ciated with different solvents, is a paramount topic for discussion, especially for its potential as a drug. Linamarin has a sugar moiety with many polar groups responsible for its physical properties. Following current trends, a molecular dynamics simulation is performed to investigate its physical properties and how different solvents, such as water, methanol (MeOH), dimethyl sulfoxide (DMSO) and dichloromethane (DCM), affect such properties. In this work, we have investigated the influence of intermolecular and intramolecular hydrogen bonding and the influence of polar and non‐polar solvents on the physical properties of linamarin. Furthermore, solvation free‐energy and electronic structure analysis are performed. The structural analysis results show that the polar groups of linamarin have strong interactions with all solvents except the etheric oxygen groups. A detailed analysis shows intermolecular hydrogen bonding between polar solvents (water, MeOH and DMSO) and the hydroxyl oxygens of linamarin. Water exhibits the strongest interaction with linamarin’s functional groups among the investigated solvents. The findings show that within the first solvation shell, the number of water molecules is greatest, while MeOH has the fewest. Cen‐ trally to the structural analysis, solvation free energy confirms DMSO to be the best solvent since it prefers to interact with linamarin over itself, while water prefers to interact with itself. While the solute–solvent interactions are strongest between linamarin and water, the solvent–solvent interac‐ tions are strongest in water. As a result, the solvation free‐energy calculations reveal that linamarin solvation is most favourable in DMSO.
dc.format application/pdf
dc.language en
dc.publisher MDPI
dc.subject Molecular dynamics
dc.subject Hydrogen bonding
dc.subject Solvation free energy
dc.title A Molecular Investigation of the Solvent Influence on Inter- and Intra-Molecular Hydrogen Bond Interaction of Linamarin
dc.type Article


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